Detailed information of SNP:
|
SNP ID:
sf1010584520(Gbrowse)
Chromosome: chr10 Position: 10584520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.59% | 36.41% |
| All Indica | 799 | 37.55% | 62.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 29.33% | 70.67% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010584520 | C->T | INTERGENIC | None |