Detailed information of SNP:
|
SNP ID:
sf1010587195(Gbrowse)
Chromosome: chr10 Position: 10587195 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.28% | 43.72% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010587195 | C->T | INTERGENIC | None |