Detailed information of SNP:



SNP ID: sf1010589760(Gbrowse)

Chromosome: chr10

Position: 10589760
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 97.46% 2.54%
All Indica799 95.49% 4.51%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 98.93% 1.07%
Indica II213 90.61% 9.39%
Indica Intermediate211 94.31% 5.69%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1010589760 C->T INTERGENIC None