Detailed information of SNP:
|
SNP ID:
sf1010657649(Gbrowse)
Chromosome: chr10 Position: 10657649 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 90.62% | 9.38% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 475 | 73.68% | 26.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 70.57% | 29.43% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010657649 | A->C | LOC_Os10g21110(LOC_Os10g21110.1) | Non-Synonymous SNP |