Detailed information of SNP:
|
SNP ID:
sf1010673099(Gbrowse)
Chromosome: chr10 Position: 10673099 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 85.84% | 14.16% |
| All Indica | 764 | 75.13% | 24.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 353 | 69.41% | 30.59% |
| Indica II | 208 | 80.29% | 19.71% |
| Indica Intermediate | 203 | 79.80% | 20.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010673099 | C->T | INTERGENIC | None |