Detailed information of SNP:
|
SNP ID:
sf1010816964(Gbrowse)
Chromosome: chr10 Position: 10816964 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1316 | 85.49% | 14.51% |
| All Indica | 766 | 97.00% | 3.00% |
| All Japonica | 429 | 62.47% | 37.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 94.99% | 5.01% |
| Indica II | 202 | 99.01% | 0.99% |
| Indica Intermediate | 205 | 98.54% | 1.46% |
| Temperate Japonica | 277 | 43.68% | 56.32% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010816964 | A->G | INTERGENIC | None |