Detailed information of SNP:
|
SNP ID:
sf1010854132(Gbrowse)
Chromosome: chr10 Position: 10854132 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.96% | 18.04% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010854132 | G->A | LOC_Os10g21350(LOC_Os10g21350.1) | Non-Synonymous SNP |