Detailed information of SNP:
|
SNP ID:
sf1010903238(Gbrowse)
Chromosome: chr10 Position: 10903238 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 73.17% | 26.83% |
| All Indica | 791 | 96.33% | 3.67% |
| All Japonica | 495 | 31.72% | 68.28% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 370 | 94.59% | 5.41% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 66 | 66.67% | 33.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010903238 | A->T | INTERGENIC | None |