Detailed information of SNP:



SNP ID: sf1010903238(Gbrowse)

Chromosome: chr10

Position: 10903238
Major allele: T

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1405 73.17% 26.83%
All Indica791 96.33% 3.67%
All Japonica495 31.72% 68.28%
Aus64 98.44% 1.56%
Indica I370 94.59% 5.41%
Indica II211 97.16% 2.84%
Indica Intermediate210 98.57% 1.43%
Temperate Japonica335 8.06% 91.94%
Tropical Japonica94 91.49% 8.51%
Japonica Intermediate66 66.67% 33.33%
Group VI/Aromatic13 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1010903238 A->T INTERGENIC None