Detailed information of SNP:
|
SNP ID:
sf1010916312(Gbrowse)
Chromosome: chr10 Position: 10916312 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 73.10% | 26.90% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 491 | 29.12% | 70.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 4.52% | 95.48% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010916312 | C->T | INTERGENIC | None |