Detailed information of SNP:
|
SNP ID:
sf1010928475(Gbrowse)
Chromosome: chr10 Position: 10928475 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 72.75% | 27.25% |
| All Indica | 790 | 95.06% | 4.94% |
| All Japonica | 497 | 32.19% | 67.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010928475 | A->G | INTERGENIC | None |