Detailed information of SNP:
|
SNP ID:
sf1010928861(Gbrowse)
Chromosome: chr10 Position: 10928861 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 70.45% | 29.55% |
| All Indica | 781 | 48.27% | 51.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 45.95% | 54.05% |
| Indica II | 207 | 49.76% | 50.24% |
| Indica Intermediate | 204 | 50.98% | 49.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010928861 | T->C | INTERGENIC | None |