Detailed information of SNP:
|
SNP ID:
sf1010932575(Gbrowse)
Chromosome: chr10 Position: 10932575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 89.01% | 10.99% |
| All Indica | 783 | 95.15% | 4.85% |
| All Japonica | 496 | 77.22% | 22.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010932575 | G->A | INTERGENIC | None |