Detailed information of SNP:
|
SNP ID:
sf1010941759(Gbrowse)
Chromosome: chr10 Position: 10941759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1292 | 67.26% | 32.74% |
| All Indica | 675 | 56.44% | 43.56% |
| All Japonica | 495 | 76.97% | 23.03% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 318 | 51.89% | 48.11% |
| Indica II | 182 | 64.84% | 35.16% |
| Indica Intermediate | 175 | 56.00% | 44.00% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010941759 | G->A | INTERGENIC | None |