Detailed information of SNP:
|
SNP ID:
sf1010990319(Gbrowse)
Chromosome: chr10 Position: 10990319 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 89.04% | 10.96% |
| All Indica | 764 | 95.29% | 4.71% |
| All Japonica | 475 | 79.37% | 20.63% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 197 | 94.92% | 5.08% |
| Indica Intermediate | 196 | 93.88% | 6.12% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 81 | 16.05% | 83.95% |
| Japonica Intermediate | 59 | 77.97% | 22.03% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010990319 | A->G | INTERGENIC | None |