Detailed information of SNP:
|
SNP ID:
sf1010991517(Gbrowse)
Chromosome: chr10 Position: 10991517 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 91.41% | 8.59% |
| All Indica | 791 | 96.59% | 3.41% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010991517 | C->T | INTERGENIC | None |