Detailed information of SNP:
|
SNP ID:
sf1010991693(Gbrowse)
Chromosome: chr10 Position: 10991693 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 52.98% | 47.02% |
| All Indica | 790 | 64.05% | 35.95% |
| All Japonica | 495 | 27.47% | 72.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 62.26% | 37.74% |
| Indica II | 208 | 63.94% | 36.06% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 333 | 7.51% | 92.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1010991693 | C->T | INTERGENIC | None |