Detailed information of SNP:
|
SNP ID:
sf1011007024(Gbrowse)
Chromosome: chr10 Position: 11007024 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 63.41% | 36.59% |
| All Indica | 799 | 83.60% | 16.40% |
| All Japonica | 494 | 24.29% | 75.71% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 332 | 3.31% | 96.69% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011007024 | C->T | LOC_Os10g21630(LOC_Os10g21630.1) | INTRON |