Detailed information of SNP:
|
SNP ID:
sf1011011441(Gbrowse)
Chromosome: chr10 Position: 11011441 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 95.48% | 4.52% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 50 | 24.00% | 76.00% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011011441 | C->T | INTERGENIC | None |