Detailed information of SNP:
|
SNP ID:
sf1011016015(Gbrowse)
Chromosome: chr10 Position: 11016015 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 72.37% | 27.63% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011016015 | A->G | INTERGENIC | None |