Detailed information of SNP:
|
SNP ID:
sf1011070320(Gbrowse)
Chromosome: chr10 Position: 11070320 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.24% | 25.76% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 34.81% | 65.19% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011070320 | T->G | INTERGENIC | None |