Detailed information of SNP:
|
SNP ID:
sf1011081103(Gbrowse)
Chromosome: chr10 Position: 11081103 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 72.88% | 27.12% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 34.21% | 65.79% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011081103 | A->G | INTERGENIC | None |