Detailed information of SNP:
|
SNP ID:
sf1011095027(Gbrowse)
Chromosome: chr10 Position: 11095027 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 97.44% | 2.56% |
| All Indica | 786 | 96.06% | 3.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011095027 | C->T | INTERGENIC | None |