Detailed information of SNP:
|
SNP ID:
sf1011095473(Gbrowse)
Chromosome: chr10 Position: 11095473 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 94.39% | 5.61% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 474 | 87.55% | 12.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 331 | 96.07% | 3.93% |
| Tropical Japonica | 79 | 68.35% | 31.65% |
| Japonica Intermediate | 64 | 67.19% | 32.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011095473 | C->T | INTERGENIC | None |