Detailed information of SNP:



SNP ID: sf1011258151(Gbrowse)

Chromosome: chr10

Position: 11258151
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 82.88% 17.12%
All Indica799 97.12% 2.88%
All Japonica497 56.34% 43.66%
Aus67 100.00% 0.00%
Indica I375 97.07% 2.93%
Indica II213 98.12% 1.88%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 37.61% 62.39%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1011258151 G->A LOC_Os10g21950(LOC_Os10g21950.1) INTRON