Detailed information of SNP:
|
SNP ID:
sf1011258553(Gbrowse)
Chromosome: chr10 Position: 11258553 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1182 | 61.25% | 38.75% |
| All Indica | 663 | 43.14% | 56.86% |
| All Japonica | 433 | 90.76% | 9.24% |
| Aus | 49 | 48.98% | 51.02% |
| Indica I | 302 | 52.65% | 47.35% |
| Indica II | 187 | 29.41% | 70.59% |
| Indica Intermediate | 174 | 41.38% | 58.62% |
| Temperate Japonica | 306 | 94.77% | 5.23% |
| Tropical Japonica | 81 | 85.19% | 14.81% |
| Japonica Intermediate | 46 | 73.91% | 26.09% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 27 | 55.56% | 44.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011258553 | A->G | LOC_Os10g21950(LOC_Os10g21950.1) | INTRON |