Detailed information of SNP:
|
SNP ID:
sf1011264819(Gbrowse)
Chromosome: chr10 Position: 11264819 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 83.05% | 16.95% |
| All Indica | 794 | 98.49% | 1.51% |
| All Japonica | 495 | 54.95% | 45.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 334 | 36.23% | 63.77% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011264819 | G->C | INTERGENIC | None |