Detailed information of SNP:
|
SNP ID:
sf1011268849(Gbrowse)
Chromosome: chr10 Position: 11268849 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1344 | 64.21% | 35.79% |
| All Indica | 756 | 48.54% | 51.46% |
| All Japonica | 473 | 88.16% | 11.84% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 354 | 63.28% | 36.72% |
| Indica II | 203 | 29.06% | 70.94% |
| Indica Intermediate | 199 | 42.21% | 57.79% |
| Temperate Japonica | 326 | 96.63% | 3.37% |
| Tropical Japonica | 83 | 69.88% | 30.12% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011268849 | A->G | LOC_Os10g21962(LOC_Os10g21962.1) | Non-Synonymous SNP |