Detailed information of SNP:
|
SNP ID:
sf1011268965(Gbrowse)
Chromosome: chr10 Position: 11268965 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 71.58% | 28.42% |
| All Indica | 784 | 86.86% | 13.14% |
| All Japonica | 491 | 43.79% | 56.21% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 361 | 83.66% | 16.34% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 331 | 25.38% | 74.62% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011268965 | T->G | LOC_Os10g21962(LOC_Os10g21962.1) | Non-Synonymous SNP |