Detailed information of SNP:
|
SNP ID:
sf1011269036(Gbrowse)
Chromosome: chr10 Position: 11269036 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 75.41% | 24.59% |
| All Indica | 790 | 90.13% | 9.87% |
| All Japonica | 494 | 48.18% | 51.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 88.28% | 11.72% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 332 | 28.31% | 71.69% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011269036 | T->C | LOC_Os10g21962(LOC_Os10g21962.1) | Synonymous |