Detailed information of SNP:
|
SNP ID:
sf1011289811(Gbrowse)
Chromosome: chr10 Position: 11289811 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 97.08% | 2.92% |
| All Indica | 787 | 95.55% | 4.45% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011289811 | G->A | LOC_Os10g22000(LOC_Os10g22000.1) | Synonymous |