Detailed information of SNP:
|
SNP ID:
sf1011292343(Gbrowse)
Chromosome: chr10 Position: 11292343 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 94.08% | 5.92% |
| All Indica | 741 | 90.15% | 9.85% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 348 | 97.70% | 2.30% |
| Indica II | 192 | 82.29% | 17.71% |
| Indica Intermediate | 201 | 84.58% | 15.42% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011292343 | G->A | INTERGENIC | None |