Detailed information of SNP:
|
SNP ID:
sf1011294675(Gbrowse)
Chromosome: chr10 Position: 11294675 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 70.05% | 29.95% |
| All Indica | 777 | 89.58% | 10.42% |
| All Japonica | 491 | 38.09% | 61.91% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 365 | 90.14% | 9.86% |
| Indica II | 205 | 85.37% | 14.63% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 332 | 19.58% | 80.42% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011294675 | A->G | LOC_Os10g22010(LOC_Os10g22010.1) | INTRON |