Detailed information of SNP:
|
SNP ID:
sf1011296253(Gbrowse)
Chromosome: chr10 Position: 11296253 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1195 | 80.17% | 19.83% |
| All Indica | 632 | 73.10% | 26.90% |
| All Japonica | 457 | 93.87% | 6.13% |
| Aus | 57 | 61.40% | 38.60% |
| Indica I | 294 | 81.29% | 18.71% |
| Indica II | 164 | 62.80% | 37.20% |
| Indica Intermediate | 174 | 68.97% | 31.03% |
| Temperate Japonica | 324 | 98.15% | 1.85% |
| Tropical Japonica | 75 | 80.00% | 20.00% |
| Japonica Intermediate | 58 | 87.93% | 12.07% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011296253 | G->A | LOC_Os10g22010(LOC_Os10g22010.1) | Synonymous |