Detailed information of SNP:
|
SNP ID:
sf1011297337(Gbrowse)
Chromosome: chr10 Position: 11297337 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 73.83% | 26.17% |
| All Indica | 795 | 92.70% | 7.30% |
| All Japonica | 491 | 39.71% | 60.29% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 332 | 19.58% | 80.42% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011297337 | T->C | LOC_Os10g22010(LOC_Os10g22010.1) | Non-Synonymous SNP |