Detailed information of SNP:
|
SNP ID:
sf1011298611(Gbrowse)
Chromosome: chr10 Position: 11298611 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 79.93% | 20.07% |
| All Indica | 787 | 92.76% | 7.24% |
| All Japonica | 495 | 55.96% | 44.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 92.64% | 7.36% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 334 | 36.83% | 63.17% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011298611 | C->T | LOC_Os10g22010(LOC_Os10g22010.1) | INTRON |