Detailed information of SNP:



SNP ID: sf1011309231(Gbrowse)

Chromosome: chr10

Position: 11309231
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 81.96% 18.04%
All Indica799 98.75% 1.25%
All Japonica497 56.14% 43.86%
Aus67 65.67% 34.33%
Indica I375 99.47% 0.53%
Indica II213 97.18% 2.82%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 37.01% 62.99%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1011309231 A->G LOC_Os10g22030(LOC_Os10g22030.1) Non-Synonymous SNP