Detailed information of SNP:
|
SNP ID:
sf1011309231(Gbrowse)
Chromosome: chr10 Position: 11309231 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.96% | 18.04% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 56.14% | 43.86% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 37.01% | 62.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011309231 | A->G | LOC_Os10g22030(LOC_Os10g22030.1) | Non-Synonymous SNP |