Detailed information of SNP:
|
SNP ID:
sf1011328985(Gbrowse)
Chromosome: chr10 Position: 11328985 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.90% | 19.10% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 53.92% | 46.08% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011328985 | T->C | INTERGENIC | None |