Detailed information of SNP:
|
SNP ID:
sf1011329093(Gbrowse)
Chromosome: chr10 Position: 11329093 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 37.61% | 62.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011329093 | T->C | INTERGENIC | None |