Detailed information of SNP:
|
SNP ID:
sf1011356670(Gbrowse)
Chromosome: chr10 Position: 11356670 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 60.19% | 39.81% |
| All Indica | 775 | 78.84% | 21.16% |
| All Japonica | 479 | 32.57% | 67.43% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 368 | 83.70% | 16.30% |
| Indica II | 201 | 79.10% | 20.90% |
| Indica Intermediate | 206 | 69.90% | 30.10% |
| Temperate Japonica | 327 | 22.02% | 77.98% |
| Tropical Japonica | 90 | 54.44% | 45.56% |
| Japonica Intermediate | 62 | 56.45% | 43.55% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011356670 | A->G | LOC_Os10g22130(LOC_Os10g22130.1) | Synonymous |