Detailed information of SNP:
|
SNP ID:
sf1011358942(Gbrowse)
Chromosome: chr10 Position: 11358942 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 79.95% | 20.05% |
| All Indica | 741 | 78.00% | 22.00% |
| All Japonica | 478 | 87.03% | 12.97% |
| Aus | 60 | 48.33% | 51.67% |
| Indica I | 352 | 85.80% | 14.20% |
| Indica II | 198 | 66.67% | 33.33% |
| Indica Intermediate | 191 | 75.39% | 24.61% |
| Temperate Japonica | 330 | 87.88% | 12.12% |
| Tropical Japonica | 86 | 76.74% | 23.26% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011358942 | A->G | LOC_Os10g22130(LOC_Os10g22130.1) | Non-Synonymous SNP |