Detailed information of SNP:
|
SNP ID:
sf1011363032(Gbrowse)
Chromosome: chr10 Position: 11363032 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 67.25% | 32.75% |
| All Indica | 767 | 55.02% | 44.98% |
| All Japonica | 481 | 88.15% | 11.85% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 363 | 53.17% | 46.83% |
| Indica II | 202 | 54.46% | 45.54% |
| Indica Intermediate | 202 | 58.91% | 41.09% |
| Temperate Japonica | 328 | 94.21% | 5.79% |
| Tropical Japonica | 91 | 68.13% | 31.87% |
| Japonica Intermediate | 62 | 85.48% | 14.52% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011363032 | T->C | LOC_Os10g22140(LOC_Os10g22140.1) | Synonymous |