Detailed information of SNP:
|
SNP ID:
sf1011372263(Gbrowse)
Chromosome: chr10 Position: 11372263 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 90.12% | 9.88% |
| All Indica | 785 | 87.64% | 12.36% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 209 | 82.30% | 17.70% |
| Indica Intermediate | 204 | 90.20% | 9.80% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011372263 | C->T | INTERGENIC | None |