Detailed information of SNP:
|
SNP ID:
sf1011374638(Gbrowse)
Chromosome: chr10 Position: 11374638 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 87.20% | 12.80% |
| All Indica | 789 | 83.40% | 16.60% |
| All Japonica | 495 | 91.72% | 8.28% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 77.96% | 22.04% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 206 | 86.41% | 13.59% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011374638 | A->G | LOC_Os10g22160(LOC_Os10g22160.1) | Synonymous |