Detailed information of SNP:
|
SNP ID:
sf1011420817(Gbrowse)
Chromosome: chr10 Position: 11420817 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 92.25% | 7.75% |
| All Indica | 779 | 97.30% | 2.70% |
| All Japonica | 493 | 87.83% | 12.17% |
| Aus | 54 | 70.37% | 29.63% |
| Indica I | 367 | 97.28% | 2.72% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 333 | 92.19% | 7.81% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011420817 | G->A | INTERGENIC | None |