Detailed information of SNP:
|
SNP ID:
sf1011431400(Gbrowse)
Chromosome: chr10 Position: 11431400 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1260 | 93.89% | 6.11% |
| All Indica | 732 | 98.22% | 1.78% |
| All Japonica | 421 | 86.46% | 13.54% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 341 | 99.12% | 0.88% |
| Indica II | 201 | 96.02% | 3.98% |
| Indica Intermediate | 190 | 98.95% | 1.05% |
| Temperate Japonica | 271 | 79.70% | 20.30% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011431400 | G->A | INTERGENIC | None |