Detailed information of SNP:
|
SNP ID:
sf1011438972(Gbrowse)
Chromosome: chr10 Position: 11438972 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 56.08% | 43.92% |
| All Indica | 768 | 84.51% | 15.49% |
| All Japonica | 485 | 10.72% | 89.28% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 358 | 85.47% | 14.53% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 204 | 84.80% | 15.20% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 86 | 44.19% | 55.81% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011438972 | C->G | LOC_Os10g22240(LOC_Os10g22240.1) | Non-Synonymous SNP |