Detailed information of SNP:
|
SNP ID:
sf1011440345(Gbrowse)
Chromosome: chr10 Position: 11440345 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 61.05% | 38.95% |
| All Indica | 779 | 43.39% | 56.61% |
| All Japonica | 495 | 86.67% | 13.33% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 366 | 42.90% | 57.10% |
| Indica II | 209 | 41.63% | 58.37% |
| Indica Intermediate | 204 | 46.08% | 53.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011440345 | C->T | LOC_Os10g22240(LOC_Os10g22240.1) | Synonymous |