Detailed information of SNP:
|
SNP ID:
sf1011440598(Gbrowse)
Chromosome: chr10 Position: 11440598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 61.14% | 38.86% |
| All Indica | 778 | 43.83% | 56.17% |
| All Japonica | 496 | 86.29% | 13.71% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 365 | 42.74% | 57.26% |
| Indica II | 205 | 42.44% | 57.56% |
| Indica Intermediate | 208 | 47.12% | 52.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011440598 | C->T | LOC_Os10g22240(LOC_Os10g22240.1) | Non-Synonymous SNP |