Detailed information of SNP:
|
SNP ID:
sf1011440865(Gbrowse)
Chromosome: chr10 Position: 11440865 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 95.74% | 4.26% |
| All Indica | 790 | 94.56% | 5.44% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011440865 | T->C | LOC_Os10g22240(LOC_Os10g22240.1) | Non-Synonymous SNP |