Detailed information of SNP:
|
SNP ID:
sf1011440893(Gbrowse)
Chromosome: chr10 Position: 11440893 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 67.53% | 32.47% |
| All Indica | 768 | 53.26% | 46.74% |
| All Japonica | 493 | 87.22% | 12.78% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 361 | 52.08% | 47.92% |
| Indica II | 205 | 53.66% | 46.34% |
| Indica Intermediate | 202 | 54.95% | 45.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 41.11% | 58.89% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011440893 | G->A | LOC_Os10g22240(LOC_Os10g22240.1) | Non-Synonymous SNP |